CPP = g++
CFLAGS = -Wall -O3

all: bwt

bwt: ntSeq.hpp ntSeq.cpp LarssonSadakane.hpp LarssonSadakane.cpp findMedian.hpp differenceCoverSample.hpp differenceCoverSample.cpp blockBWT.hpp blockBWT.cpp
	$(CPP) $(CFLAGS) -o bwt ntSeq.cpp LarssonSadakane.cpp differenceCoverSample.cpp blockBWT.cpp

clean:
	rm *.o bwt
